Genomics – Sangram Keshari Sahu

November 15, 2023

variant-calling GATK DeepVariant genomics VCF bioinformatics WGS

Variant Calling Pipelines: From Raw Reads to Annotated VCF

A complete walkthrough of short-variant calling using GATK4 HaplotypeCaller and DeepVariant — covering alignment, BQSR, variant filtering, and functional annotation with code throughout.

June 27, 2023

deep-learning genomics pytorch gene-expression bioinformatics machine-learning

Deep Learning for Genomics: Predicting Gene Expression with PyTorch

A practical walkthrough of building a neural network to predict gene expression from DNA sequence — covering data preparation, model architecture, training, and interpretation.

Tag: Genomics

Variant Calling Pipelines: From Raw Reads to Annotated VCF

Deep Learning for Genomics: Predicting Gene Expression with PyTorch